PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.752ZP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 211aa    MW: 23645.7 Da    PI: 5.419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.752ZPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-1569111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed+ +++a++++G++ W+tIar +  +Rt++ +k++w++ 
      Aradu.752ZP  69 AFTPKEDDTIIRAHTRFGNK-WATIARLIF-NRTDNAIKNHWNST 111
                      69******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-1654117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2057115IPR009057Homeodomain-like
PROSITE profilePS5129420.02362116IPR017930Myb domain
SMARTSM007171.6E-1166114IPR001005SANT/Myb domain
PfamPF002492.8E-1269111IPR001005SANT/Myb domain
CDDcd001674.42E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDRDRTAVPQ ALDGIKEGSP APSRKINALT LNDQSDVGEI TDKSIEETIE DSAELRWCNQ  60
LSPQVEYRAF TPKEDDTIIR AHTRFGNKWA TIARLIFNRT DNAIKNHWNS TLKRKCASMD  120
PIDDPHFAQP PKRSVSTGAA ILVSTVVVRY SLPTVMAMTE MAGRKGRMRM ESQECAVEMS  180
EQMLTTREFS RETMKSMAVC GESLEDSGLD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1msf_C2e-194011629105C-Myb DNA-Binding Domain
1mse_C2e-194011629105C-Myb DNA-Binding Domain
1gv2_A2e-194011629105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2086741e-87KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948160.11e-106PREDICTED: myb-related protein Myb4-like
SwissprotQ9FDW11e-37MYB44_ARATH; Transcription factor MYB44
TrEMBLV5T7X24e-54V5T7X2_ARAHY; Putative MYB-related protein 20
STRINGGLYMA11G05550.16e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2082424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-39myb domain protein r1